Relationship plots between RIF1, RIF2 and DE genes

Generate plots for the relationship between the RIF output analysis (RIF1 and RIF2) and for differentially expressed genes (DE).

RIFPlot(object, color = "darkblue", type = "RIF")

Arguments

object	CeTF object resulted from runAnalysis function.
color	Color of points (default: darkblue)
type	Type of plot. The available options are: RIF or DE (default: RIF)

Value

Returns a relationship plot between RIF1 and RIF2 or a plot with the relationship between RIF1 or RIF2 with DE genes.

Details

This function can only be used after using the runAnalysis function as it uses the CeTF class object as input.

Examples

# load the CeTF class object resulted from runAnalysis function
data(CeTFdemo)

# performing RIFPlot for RIF
RIFPlot(object = CeTFdemo, 
        color  = 'darkblue', 
        type   = 'RIF')

        
# performing RIFPlot for DE
RIFPlot(object = CeTFdemo, 
        color  = 'darkblue', 
        type   = 'DE')